Create SAGA samples target file.

Source: R/saga_gentargets.R

saga_gentargets will automatically create a "SampleInformation.txt" file (SIF) if none is provided. If you chose to use this function, a folder with sample *.txt files is needed. Each textfile must contain the full Agilent microarray information.

saga_gentargets(smplpath)

Arguments

smplpath

path to the saga data folder with the user samples.

Value

targets default target file for user samples.

Details


PLEASE NOTE: When the targets file is generated it cannot know about your sample batches. Batch defaults to No. for each sample is 1. You can use any other number to indicate your batches BUT you'll have to change the numbers manually (i.e, in Excel or in a text editor). Since saga cannot know about these information, <ou will also have to adjust the Group, Vector and TrueLabel fields manually.