The saga_wrapper function integrates all SAGA functions into one. With this function you are not as flexible as
with the single ones but you can run the analysis/ classification in one step.
However, this requires a complete SampleInformatin.txt file. For GSEA analysis the SampleInformation file must also fulfill
the neccessary criteria. See saga_vignette for more information.
saga_wrapper(smplpath, showModel = 1, doGSEA = 0)
| smplpath | sample path |
|---|---|
| showModel | Can be 0 or 1. If set to 1 (default) PCA plot (+samples) will be shown. |
| doGSEA | Can be 0 or 1. If set to 1, GSEA analysis will be added to the analysis. |
output optimized SVM model for classification.
saga_wrapper