The bimUninformed
estimates reasonable randomization cutoffs for
simOption items. The cutoff is determined by monitoring the adjusted p-value
development in post-hoc ANOVA tests. The optimal cutoff is reached when
the adjusted p-values show no overlap, or zero deviation in the plot.
bimUninformed( ydata = NULL, GT = NULL, simOpt = NULL, limitToRun = 5, seed = TRUE, showPlot = TRUE, ylim = c(-0.5, 1.5) )
ydata | curated data.frame from the preprocessing function. |
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GT | item list with the ground truth (GT; letters are case sensitive!) |
simOpt | item to be checked (this can be an item from the GT or a new one. Remove the item from GT if specified here!) |
limitToRun | limit to this number of repetitions for the randomizations (default 5, you'll probably need more) |
seed | use constant seeding for stable plot results (default=TRUE) |
showPlot | show stability plot |
ylim | y-limits of the output plot (default c(-0.5,1.5)) |
list with the randomized worth values (W), the result of the posthoc tests (posthocs), the cutoff values (cutoffs) and the conditional plot output (p).